Items 1-20 out of 22 displayed.
Bioinformatic tools for DNA, protein and peptide sequences.
| Sequence Analysis Tools - http://www.sequenceanalysis.com/ Site dedicated to sequenc analysis. - [Read about Sequence Analysis Tools] |
| Rare Codons' Search Program - http://www.molbiol.ru/eng/scripts/01_11.html Rare Codons' Search Program allows you to find rare codons within the coding regions of your proteins. - [Read about Rare Codons' Search Program] |
| Read a ClustalW (aln) or GCG PileUp (msf) alignment and write a Phylip usable format - http://insilico.ehu.es/tophylip/ This tool converts ClustalW or Pileup, nucleotide or amino acid alignments into a Phylip input format. Additionally, it removes positions at the beginning and end of the alignment on request, such as those for which not all positions are available in all sequences. - [Read about Read a ClustalW (aln) or GCG PileUp (msf) alignment and write a Phylip usable format] |
| Peptide pl and MW Calculator - http://www.fmi.ch/members/reto.portmann/pepeval.html Simple to use calculator for your peptide pl modifications and molecular weight. - [Read about Peptide pl and MW Calculator] |
| Motif Scanner - http://hits.isb-sib.ch/cgi-bin/PFSCAN Motif scanner is a tool that allows you to find all known motifs that occur in a sequence. This scanner lets you paste a protein sequence, select the collections of motifs to scan for, and launch the search. - [Read about Motif Scanner] |
| Basic Melting Temperature (Tm) Calculation - http://insilico.ehu.es/tm.php This tool will calculate the basic melting temperature Tm. - [Read about Basic Melting Temperature (Tm) Calculation] |
| Determination of Molecular Weight - http://insilico.ehu.es/mini_tools/molecular_weight/ The aim of this tool is to help calculate Molecular Weight of bands in gels. A regression curve (Rf versus logMw of markers) will be calculated - [Read about Determination of Molecular Weight] |
| Protein sequence analysis - http://www.biochem.ucl.ac.uk/bsm/dbbrowser/jj/prefacefrm.html Protein sequence analysis site with plenty of information and web practical guides. - [Read about Protein sequence analysis] |
| Six-Frame Translation - http://www.molbiol.ru/eng/scripts/01_13.html Sequence translator with numerous effective options. - [Read about Six-Frame Translation] |
| CLEANER - http://www.justbio.com/cleaner/index.php Sequence CLEANER allows you to clean your sequences from unwanted text marks and spaces. - [Read about CLEANER] |
| CELLO v.2.5: subCELlular LOcalization predictor - http://cello.life.nctu.edu.tw/ CELLO v.2.5: subCELlular LOcalization predictor from Molecular Bioinformatics Center, National Chiao Tung University. As described in: (1) Yu CS, Lin CJ, Hwang JK: Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions. Protein Science 2004, 13:1402-1406. (2) Yu CS, Chen YC, Lu CH, Hwang JK: Prediction of protein subcellular localization. Proteins: Structure, Function and Bioinformatics 2006, (in press). - [Read about CELLO v.2.5: subCELlular LOcalization predictor] |
| JustBio TRANSLATOR - http://www.justbio.com/translator/index.php The JustBio Translator translates your DNA sequences from 1 to 6 phases into formated outputs. - [Read about JustBio TRANSLATOR] |
| Alignment of two DNA, RNA or protein sequences - http://insilico.ehu.es/align/ This tool will align your DNA RNA or protein sequences. - [Read about Alignment of two DNA, RNA or protein sequences] |
| PROTCALC - http://www.justbio.com/protcalc/index.php PROTCALC allows you to determine statistically, and theoretically the molecular weight and extinction data of your protein sequences. - [Read about PROTCALC] |
| Coloured Sequences for Presentations - http://insilico.ehu.es/create_image/ This tool will create an image of your sequence - [Read about Coloured Sequences for Presentations] |
| Discriminatory Power Calculator - http://insilico.ehu.es/mini_tools/discriminatory_power/ The Discriminatory Power (D) is the average probability that the typing system will assign a different type to two unrelated strains randomly sampled in the microbial population of a given taxon. - [Read about Discriminatory Power Calculator] |
| BCM Search Launcher - http://searchlauncher.bcm.tmc.edu/ Launcher is an on-going project to organize molecular biology-related search and analysis services available on the WWW by function by providing a single point-of-entry for related searches. - [Read about BCM Search Launcher] |
| Human Gene Sorter Tool - http://genome.ucsc.edu/cgi-bin/hgNear?org=Human&db=hg18&hgsid=99373706 The human gene sorter tools, allows you to display a sorted table of genes that are related to one another. The relationship can be one of several types, including protein-level homology, similarity of gene expression profiles, or genomic proximity. - [Read about Human Gene Sorter Tool] |
| In silico simulation of molecular biology experiments - http://insilico.ehu.es/translate/ In silico simulation program for translating DNA to protein - [Read about In silico simulation of molecular biology experiments] |
| YASS :: DNA local alignment tool - http://bioinfo.lifl.fr/yass/ YASS is a similarity search tool of genomic (DNA/RNA) sequences in fasta or plain text format (it produces pairwise local alignments). - [Read about YASS :: DNA local alignment tool] |